Using DeepLabCut for 3D markerless pose estimation across species and behaviors


Noninvasive behavioral tracking of animals during experiments is critical to many scientific pursuits. Extracting the poses of animals without using markers is often essential to measuring behavioral effects in biomechanics, genetics, ethology, and neuroscience. However, extracting detailed poses without markers in dynamically changing backgrounds has been challenging. We recently introduced an open-source toolbox called DeepLabCut that builds on a state-of-the-art human pose-estimation algorithm to allow a user to train a deep neural network with limited training data to precisely track user-defined features that match human labeling accuracy. Here, we provide an updated toolbox, developed as a Python package, that includes new features such as graphical user interfaces (GUIs), performance improvements, and active-learning-based network refinement. We provide a step-by-step procedure for using …

Matthias Bethge
Matthias Bethge
Professor for Computational Neuroscience and Machine Learning & Director of the Tübingen AI Center

Matthias Bethge is Professor for Computational Neuroscience and Machine Learning at the University of Tübingen and director of the Tübingen AI Center, a joint center between Tübingen University and MPI for Intelligent Systems that is part of the German AI strategy.