Electrophysiological, transcriptomic and morphologic profiling of single neurons using Patch-seq


Despite the importance of the mammalian neocortex for complex cognitive processes, we still lack a comprehensive description of its cellular components. To improve the classification of neuronal cell types and the functional characterization of single neurons, we present Patch-seq, a method that combines whole-cell electrophysiological patch-clamp recordings, single-cell RNA-sequencing and morphological characterization. Following electrophysiological characterization, cell contents are aspirated through the patch-clamp pipette and prepared for RNA-sequencing. Using this approach, we generate electrophysiological and molecular profiles of 58 neocortical cells and show that gene expression patterns can be used to infer the morphological and physiological properties such as axonal arborization and action potential amplitude of individual neurons. Our results shed light on the molecular underpinnings of …

Matthias Bethge
Matthias Bethge
Professor for Computational Neuroscience and Machine Learning & Director of the Tübingen AI Center

Matthias Bethge is Professor for Computational Neuroscience and Machine Learning at the University of Tübingen and director of the Tübingen AI Center, a joint center between Tübingen University and MPI for Intelligent Systems that is part of the German AI strategy.